Archive

Projects that are no longer relevant. They keep their pages and their URLs.

Two kinds of project end up here. Some are finished and some were overtaken, because the question they asked got answered somewhere else or the question stopped being relevant. These cards no longer sit on the Projects page.

GenAI

Second Brain

Finished

Scoping an AI-searchable store of past work, fed first from Google Drive and this site: which sources go in, which tool, and what questions it should answer. The second…

AI exposition

Set aside while the models move

An AI draft arrives fluent and with the emphasis in the wrong places: pages on the routine steps, a paragraph on the one that decided the result, no prior art, no overview.…

Positron Assistant configuration

Overtaken by a button

Scoping a committed settings file to stop Posit Assistant asking before every edit. Obsolete: the approval mode has a picker in the chat pane. Kept for its reference table…

Claude Code at Work

Given

A fifteen-minute show-and-tell at the AI symposium on using Claude Code for open-source pharmacometrics: four worked examples, how it is set up, and what has to be checked…

Site Maintenance

Collected Wisdom

Folded into Second Brain

Scoping a second site, in its own repository, that indexes the personal Google Docs on meaning, parenting and music for their author: what it holds, what stays unshared, and…

Site integration

Finished

Merging the Google Sites personal site into this one, with nothing dropped without a recorded decision to drop it. The content has moved, the site answers at…

Matlab tools

Matlab Tools for Tumor Spheroid and Collagen Network Analysis

MATLAB, before 2011

AIRE, FIRE and BEAMS: MATLAB tools written during the PhD thesis and postdoc, for tumour spheroid invasive radii, network geometry from confocal images, and beam network…